FlashDevelop for multiple projects

Hi,

I'm new at flash development, have tried IntelliJ and now mostly using
FlashBuilder 4.7 while still trying to get a non IDE make working on
linux. But this is just an introduction, I'm mostly interested in having
a fast build and FlashBuilder 4.7 falls short for me (1 minute builds).
I've tried FlashDevelop but the project I work on has two swc libraries
and two apps using those. Does anyone use FlashDevelop for multiple
projects and if so how?

Thanks,
Alon